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首頁 全所PI名錄
  • 吳薇
  • 研究員,研究組長,博士生導師
  • E-mail: wuw@sibcb.ac.cn
  • 實驗室主頁: https://wulab.sibcb.ac.cn/
    個人簡介:
  •  2012年畢業于華中科技大學,獲生物信息技術學士學位;2017年畢業于中科院生物物理研究所,獲生物信息學博士學位;2018至2022年于美國國家癌癥研究中心從事博士后研究;于2022年7月起任中科院分子細胞科學卓越創新中心(生物化學與細胞生物學研究所)研究員,研究組長,博士生導師

    社會任職:
    研究方向:
  • 生物信息學、DNA損傷與修復
    研究工作:
  •   基因組DNA生物遺傳信息的重要載體,維持其穩定性和準確性是一切生命活動的基礎。除UV射線等外源性刺激之外,細胞在正常生命代謝活動中會發生內源的程序性DNA損傷,包括起始減數分裂同源重組所需的DNA雙鏈斷裂;TET家族蛋白介導的主動去甲基化過程所需的DNA單鏈斷裂;適應性免疫中起始基因重排、高頻突變、DNA重組等過程以產生抗體多樣性的DNA損傷等。程序性損傷通常受到細胞精密地調控以保證遺傳信息的完整。然而,如果這些損傷在修復過程中發生錯誤,例如DNA雙鏈斷裂的一端錯誤地連接到不同染色體斷裂的另一端時會導致易位,則可能促進癌癥等疾病的發生和影響疾病治療效果。

      與此同時,細胞內也存在著大量內源的非程序性損傷,例如DNA復制過程中產生的堿基錯配,核苷酸的氧化、烷化、脫氨基化這些異常修飾等。基因組上大量遍布的短串聯重復序列(Short Tandem Repeat, STR)也是一個非常重要的非程序損傷來源。STR由1-6個核苷酸通過重復排列組成。根據重復序列的不同,STR可以在RNA轉錄和DNA復制等過程中形成G四聯體(G-quadruplex)、三鏈DNA(Triplex DNA)、十字架(cruciform)等二級結構,而這些結構極易引起基因組不穩定。

      我們將利用已開發的用于檢測DNA斷裂和修復過程的高通量測序技術,結合生物信息學分析方法及分子生物學等多學科技術手段研究不同類型內源性損傷在腫瘤中的影響,包括(但不限于)以下幾個方向:1)神經細胞內的程序性DNA損傷與化療引起的神經損傷之間的關聯。2)短重復序列引起的基因組不穩定對腫瘤發生、進展的影響。

    承擔科研項目情況:
    代表論著:
    1. Pavani, R.*, Tripathi, V.*, …, Wu, W., Cejka, P., Walter, J. C., & Nussenzweig, A. (2024). Structure and repair of replication-coupled DNA breaks. Science (New York, N.Y.), eado3867. Advance online publication.
    2. Liang, Y.*, Yuan, Q.*, Zheng, Q., Mei, Z., Song, Y., Yan, H., Yang, J., Wu, S., Yuan, J., & Wu, W. (2024). DNA Damage Atlas: an atlas of DNA damage and repair. Nucleic acids research, 52(D1), D1218–D1226. https://doi.org/10.1093/nar/gkad845
    3. Liu, L. *, Liu, Z. *, Liu, Q. *, Wu, W.*, …, Chen, R. (2023). LncRNA INHEG promotes glioma stem cell maintenance and tumorigenicity through regulating rRNA 2'-O-methylation. Nature communications, 14(1), 7526.
    4. Wang, D.*,?Wu, W.*, Callen, E.*, ..., Nussenzweig, A. (2022). Active DNA demethylation promotes cell fate specification and the DNA damage response.?Science?(New York, N.Y.),?378(6623), 983–989.
      • Perspectives by Isaac F. López-moyado and Anjana Rao,?Science. 2022 Dec 2;378(6623):948-949
    5. Matos-Rodrigues, G.*, van Wietmarschen, N.*,?Wu, W., …, Nussenzweig, A. (2022). S1-END-seq reveals DNA secondary structures in human cells.?Molecular cell,?82(19), 3538–3552.e5.
    6. Fowler, F., Chen, B. R., Zolnerowich, N.,?Wu, W.,?..., Tyler J.K. (2022). DNA-PK promotes DNA end resection at DNA double strand breaks in G0 cells.?Elife,?11, e74700.
    7. Paiano, J.*, Zolnerowich, N.*,?Wu, W., Pavani, R., …, Nussenzweig, A. (2021) Role of 53BP1 in End Protection and DNA synthesis at DNA breaks.?Genes & Development.?35:1-12
    8. Chen, B. R., Wang, Y., Tubbs, A., Zong, D., Fowler, F., Zolnerowich, N.,?Wu, W.,?..., Sleckman, B. P. (2021) Lin37-DREAM Prevents DNA End Resection and Homologous Recombination at DNA Double Strand Breaks in Quiescent Cells.?Elife,?10, e68466.
    9. Olbrich, T., Vega-Sendino, M., Tillo, D., Wu, W.,?..., Macias, S. R. (2021). CTCF is a Barrier for Totipotent-like Reprogramming.?Nature Communications, 12(1), 4856.
    10. Wu, W.*,Hill, S. E.*, Nathan, W.*, ..., Nussenzweig, A. (2021). Neuronal enhancers are hotspots for DNA single-strand break repair.?Nature,593(7859), 440-444.
      • Spotlighted by Vishnu Dileep and Li-Huei Tsai,?Neuron, 2021,109(11), 1766-1768
      • Research Highlight by?Nature Reviews Molecular Cell Biology, 2021,22(5), 304-305.
    11. Shinoda, K., Zong, D., Callen, E.,?Wu, W.,Dumitrache, L. C., Belinky, F., ..., Nussenzweig, A. (2021). The dystonia gene THAP1 controls DNA double-strand break repair choice.Molecular Cell,?81(12), 2611-2624.
    12. van Wietmarschen, N.*, Sridharan, S.*, Nathan, W.J.*, Tubbs, A.*, Chan, E.M.*, Callen, E.#,?Wu, W.#(#equal contribution),…, Nussenzweig, A. (2020). Repeat expansions confer WRN dependence in microsatellite-unstable cancers.?Nature, 586(7828), 292-298.
    13. Nacson, J., Di Marcantonio, D., Wang, Y., Bernhardy, A.J., Clausen, E., Hua, X., Cai, K.Q., Martinez, E., Feng, W., Callén, E.,?Wu, W.,?…, Johnson, N. (2020). BRCA1 Mutational Complementation Induces Synthetic Viability.?Molecular Cell, 78(5), 951-959.
    14. Mahgoub, M.*, Paiano, J.*, Bruno, M.,?Wu, W.,?…, Macfarlan, T.S. (2020). Dual histone methyl reader ZCWPW1 facilitates repair of meiotic double strand breaks in male mice.?Elife, 9, e53360.
    15. Sciascia, N.,?Wu, W.#,?Zong, D.#(#equal contribution),…, Nussenzweig, A. (2020). Suppressing Proteasome Mediated Processing of Topoisomerase II DNA-Protein Complexes Preserves Genome Integrity.?Elife, 9, e53447.
    16. Paiano, J.*,?Wu, W.*,?…, Nussenzweig, A. (2020). ATM and PRDM9 Regulate SPO11-bound Recombination Intermediates During Meiosis.?Nature Communications,11(1), 1-15.
    17. Callen, E.*, Zong, D.*,?Wu, W., …, Nussenzweig, A. (2019). 53BP1 Enforces Distinct Pre- and Post-resection Blocks on Homologous Recombination.?Molecule Cell, 77(1), 26-38.
    18. Wang, Y.*, Zhu, P.*, Luo, J.*, Wang, J.*, Liu, Z.*,?Wu, W., …, Fan, Z. (2019). LncRNA HAND2-AS1 promotes liver cancer stem cell self-renewal via BMP signaling.?The EMBO journal, 38(17), e101110.
    19. Tubbs, A.*, Sridharan, S.*, van Wietmarschen, N., Maman, Y., Callen, E., Stanlie, A.,?Wu, W., …, Nussenzweig, A. (2018). Dual roles of Poly (dA: dT) tracts in replication initiation and fork collapse.?Cell, 174(5), 1127-1142.
    20. Ye, B. *, Liu, B. *, Yang, L. *, Zhu, X. *, Zhang, D.*,?Wu, W., …, Fan, Z. (2018). LncKdm2b controls self-renewal of embryonic stem cells via activating expression of transcription factor Zbtb3.?The EMBO journal, 37(8), e97174.
    21. Cui, Y.*, Chen, X.*, Niu, Y. *, Wang, D., Luo, H., Fan. Z., Wang, D.,?Wu, W., ... Chen, R. (2017). Dynamic-BM: Multi-species dynamic BodyMap database from temporal RNA-seq data.?Briefings in Bioinformatics, 19(6), 1302-1309.
    22. Zhang, Z.*, Jones, A E.*,?Wu, W.*, Kim, J., Kang, Y., Bi, X., ..., Wang, H. (2017). Role of remodeling and spacing factor 1 in histone H2A ubiquitination-mediated gene silencing.?Proc Natl Acad Sci U S A, 114(38), E7949-E7958.
    23. Sun, Y.*, Wei, G.*, Luo, H.*,?Wu, W.*, Skogerb?, G., Luo, J. & Chen, R. (2017). The Long Noncoding RNA SNHG1 Regulates Both Local and Distal Genes in Cancer.?Oncogene, 36(49), 6774-6783.
    24. Yan, X.*, Zhang, D.*,?Wu, W.,?…, Fan, Z. (2017). Mesenchymal stem cells promote hepatocarcinogenesis via lncRNA-MUF interaction with ANXA2 and miR-34a.?Cancer research, 77(23), 6704-6716.
    25. Chen, J., Liu, L., Wei, G.,Wu, W., Luo, H., Yuan, J., ... Chen, R. (2016). The long noncoding RNA ASNR regulates degradation of Bcl-2 mRNA through its interaction with AUF1.?Scientific reports, 6(1), 1-11.
    26. Hao, Y.*,Wu, W.*, Li, H., Yuan, J., Luo, J., Zhao, Y.?& Chen, R. (2016). NPInter v3.0: an upgraded database of noncoding RNA-associated interactions.Database, 2016.
    27. Yuan, J.*, Yue, H.*, Zhang, M., Luo, J., Liu, L.,?Wu, W., ..., Chen, R. (2016). Transcriptional profiling analysis and functional prediction of long noncoding RNAs in cancer.?Oncotarget, 7(7), 8131.
    28. Zhao, Y.*, Li, H.*, Fang, S., Kang, Y.,?Wu, W., Hao, Y., ..., Chen, R. (2016). NONCODE 2016: an informative and valuable data source of long non-coding RNAs.?Nucleic Acids Res, 44(D1), D203-D208.
    29. Yuan, J.*,?Wu, W.*, Xie, C., Zhao, G., Zhao, Y. & Chen, R. (2014).NPInter v2.0: an updated database of ncRNA interactions.?Nucleic Acids Res, 42(D1), D104-D108.
    30. Xie, C.*, Yuan, J.*, Li, H., Li, M., Zhao, G., Bu, D., Zhu, W.,?Wu, W., ..., Chen, R. & Zhao, Y. (2014). NONCODEv4: exploring the world of long non-coding RNA genes.?Nucleic Acids Res, 42(D1), D98-D103.
    獲獎及榮譽:
    研究組成員:
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